Internal life-science research workflows that help Codex interpret a user's research question, normalize the relevant entities, choose the right skills, and synthesize evidence-backed answers across public resources.
The plugin spans human genetics, functional genomics, expression, pathways, protein structure, chemistry, pharmacology, literature, clinical evidence, and public study discovery, with a research-router entrypoint for broad tasks and optional subagent-assisted parallel work when evidence lanes are independent.
Skills 50 in the ChatGPT listing
AlphaFold Submit compact AlphaFold Protein Structure Database API requests for prediction, UniProt summary, sequence summary, and annotation lookups. Bgee Submit compact Bgee SPARQL requests for healthy wild-type expression metadata and ontology-aware lookup patterns. BindingDB Submit compact BindingDB REST API requests for ligand-target binding lookups by PDB, UniProt, or similarity search. BioBank Japan PheWAS Fetch compact BioBank Japan PheWAS summaries for single variants by accepting rsID, GRCh38, or GRCh37 input and resolving to the required GRCh37 query. bioRxiv / medRxiv Submit compact bioRxiv and medRxiv API requests for details, publication-linkage, and DOI lookups. BioStudies / ArrayExpress Submit compact BioStudies and ArrayExpress API requests for free-text search and accession-based study retrieval. cBioPortal Submit compact cBioPortal API requests for studies, molecular profiles, mutations, clinical data, and samples. CELLxGENE Submit compact CELLxGENE Discover API requests for public collection and dataset metadata. ChEBI Submit compact ChEBI 2.0 API requests for chemical search, compound lookup, ontology traversal, and structure metadata. ChEMBL Submit compact ChEMBL API requests for activity, molecule, target, mechanism, and text-search endpoints. CIViC Submit compact CIViC GraphQL requests for cancer variant interpretation schema inspection and targeted evidence retrieval. ClinicalTrials.gov Submit compact ClinicalTrials.gov API v2 requests for study search, metadata, enums, search areas, and field statistics. ClinVar / NCBI Variation Submit compact ClinVar Clinical Tables and NCBI Variation requests for search, VCV, RCV, SCV, and RefSNP lookups. EFO Ontology Submit compact EFO OLS4 requests for search, term lookup, children, and descendants. ENCODE Submit compact ENCODE REST API requests for object lookups, portal-style search, and metadata retrieval. Ensembl Submit compact Ensembl REST API requests for lookup, overlap, cross-reference, and variation endpoints. EpiGraphDB Submit compact EpiGraphDB API requests for ontology, literature, MR, gene-drug, and support-path evidence. eQTL Catalogue Submit compact eQTL Catalogue API requests for association retrieval and documented metadata endpoints. EVA Submit compact EVA REST requests for species metadata and archived variant lookups. FinnGen PheWAS Fetch compact FinnGen PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Genebass Gene Burden Submit compact Genebass gene burden requests for one Ensembl gene ID and one burden set. gnomAD Submit compact gnomAD GraphQL requests for frequency, gene constraint, and variant context queries. GTEx eQTL Fetch GTEx single-tissue eQTL associations from one variant input by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query for the GTEx v2 API. GWAS Catalog Submit compact GWAS Catalog REST API v2 requests for studies, associations, SNPs, EFO traits, genes, publications, loci, and metadata. HMDB Submit compact HMDB search requests for metabolites, proteins, diseases, and pathways. Human Protein Atlas Submit compact Human Protein Atlas requests for gene JSON, search downloads, and page-level tissue or cell-line lookups. IPD Submit compact IPD REST requests for HLA allele and cell-level metadata using the public IPD query API. Locus-to-Gene Mapper Map GWAS loci to ranked candidate genes using a deterministic multi-skill chain (EFO -> GWAS -> coordinates -> Open Targets L2G/coloc -> eQTL -> burden/coding context), with reproducible tables and optional figures. MetaboLights Submit compact MetaboLights requests for study discovery and study-level metabolomics metadata. MGnify Submit compact MGnify API requests for microbiome studies, samples, and biome metadata. NCBI BLAST Submit, poll, and summarize NCBI BLAST Common URL API jobs (Blast.cgi) for nucleotide or protein sequences. NCBI Clinical Tables Submit compact Clinical Tables NCBI Gene requests for human gene lookup, pagination, and field selection. NCBI Datasets Submit compact NCBI Datasets v2 requests for assembly, genome, taxonomy, and related metadata endpoints. NCBI Entrez Submit compact NCBI Entrez E-Utilities requests for PubMed, Gene, Protein, Nucleotide, PMC metadata, and GEO metadata workflows. NCBI PMC Submit compact NCBI PMC Open Access requests for article/file availability metadata. Open Targets Submit compact Open Targets Platform GraphQL requests for target, disease, drug, variant, study, and search data, including associated-disease datasource heatmap matrices. PharmGKB Submit compact PharmGKB API requests for genes, variants, clinical annotations, dosing guidelines, and search. PRIDE Submit compact PRIDE Archive API requests for proteomics project discovery and project-level metadata. ProteomeXchange Submit compact ProteomeXchange PROXI requests for datasets, libraries, peptidoforms, proteins, PSMs, spectra, and USI examples. PubChem PUG Submit compact PubChem PUG REST requests for compound properties, descriptions, assay summaries, and substance metadata. QuickGO Submit compact QuickGO requests for GO terms, annotations, and ontology traversal. RCSB PDB Submit compact RCSB PDB requests for core metadata, Search API queries, and FASTA downloads. Reactome Submit compact Reactome ContentService requests for pathway, event, participant, search, and diagram-related data. Research Router Route broad or ambiguous life-sciences research requests to the right skills, normalize core entities, optionally parallelize independent evidence gathering with subagents when available, and synthesize a concise evidence-backed answer. Rhea Submit compact Rhea reaction search requests for biochemical reactions and reaction IDs. RNAcentral Submit compact RNAcentral API requests for RNA entry browsing, single-entry lookup, and cross-reference retrieval. STRING Submit compact STRING API requests for network, interaction partner, and enrichment endpoints. TPMI PheWAS Fetch compact TPMI PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. UKB-TOPMed PheWAS Fetch compact UKB-TOPMed PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. UniProt Submit compact UniProt REST API requests for UniProtKB, UniRef, UniParc, and FASTA stream endpoints. 