Query structured public life-science databases
Helps you query and interpret structured public life-science resources across human genetics, variants, expression, functional genomics, proteins, structures, pathways, chemistry, pharmacology, clinical evidence, and public omics datasets. Use focused skills for source-specific lookups or combine a small set of orthogonal databases for evidence-backed research.
Skills 44 in the ChatGPT listing
Alphafold skill Submit compact AlphaFold Protein Structure Database API requests for prediction, UniProt summary, sequence summary, and annotation lookups. Bgee skill Submit compact Bgee SPARQL requests for healthy wild-type expression metadata and ontology-aware lookup patterns. Bindingdb skill Submit compact BindingDB REST API requests for ligand-target binding lookups by PDB, UniProt, or similarity search. BioBank Japan PheWAS Fetch compact BioBank Japan PheWAS summaries for single variants by accepting rsID, GRCh38, or GRCh37 input and resolving to the required GRCh37 query. Biostudies arrayexpress skill Submit compact BioStudies and ArrayExpress API requests for free-text search and accession-based study retrieval. Cbioportal skill Submit compact cBioPortal API requests for studies, molecular profiles, mutations, clinical data, and samples. Cellxgene skill Submit compact CELLxGENE Discover API requests for public collection and dataset metadata. Chebi skill Submit compact ChEBI 2.0 API requests for chemical search, compound lookup, ontology traversal, and structure metadata. Chembl skill Submit compact ChEMBL API requests for activity, molecule, target, mechanism, and text-search endpoints. Civic skill Submit compact CIViC GraphQL requests for cancer variant interpretation schema inspection and targeted evidence retrieval. Clinicaltrials skill Submit compact ClinicalTrials.gov API v2 requests for study search, metadata, enums, search areas, and field statistics. Clinvar variation skill Submit compact ClinVar Clinical Tables and NCBI Variation requests for search, VCV, RCV, SCV, and RefSNP lookups. Efo ontology skill Submit compact EFO OLS4 requests for search, term lookup, children, and descendants. Encode skill Submit compact ENCODE REST API requests for object lookups, portal-style search, and metadata retrieval. Ensembl skill Submit compact Ensembl REST API requests for lookup, overlap, cross-reference, and variation endpoints. Epigraphdb skill Submit compact EpiGraphDB API requests for ontology, literature, MR, gene-drug, and support-path evidence. Eqtl catalogue skill Submit compact eQTL Catalogue API requests for association retrieval and documented metadata endpoints. Eva skill Submit compact EVA REST requests for species metadata and archived variant lookups. FinnGen PheWAS Fetch compact FinnGen PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Genebass gene burden skill Submit compact Genebass gene burden requests for one Ensembl gene ID and one burden set. Gnomad graphql skill Submit compact gnomAD GraphQL requests for frequency, gene constraint, and variant context queries. GTEx eQTL Fetch GTEx single-tissue eQTL associations from one variant input by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query for the GTEx v2 API. Gwas catalog skill Submit compact GWAS Catalog REST API v2 requests for studies, associations, SNPs, EFO traits, genes, publications, loci, and metadata. Human protein atlas skill Submit compact Human Protein Atlas requests for gene JSON, search downloads, and page-level tissue or cell-line lookups. Ipd skill Submit compact IPD REST requests for HLA allele and cell-level metadata using the public IPD query API. Metabolights skill Submit compact MetaboLights requests for study discovery and study-level metabolomics metadata. Mgnify skill Submit compact MGnify API requests for microbiome studies, samples, and biome metadata. Ncbi clinicaltables skill Submit compact Clinical Tables NCBI Gene requests for human gene lookup, pagination, and field selection. Ncbi datasets skill Submit compact NCBI Datasets v2 requests for assembly, genome, taxonomy, and related metadata endpoints. Ncbi entrez skill Submit compact NCBI Entrez E-Utilities requests for PubMed, Gene, Protein, Nucleotide, PMC metadata, and GEO metadata workflows. Opentargets skill Submit compact Open Targets Platform GraphQL requests for target, disease, drug, variant, study, and search data, including associated-disease datasource heatmap matrices. Pharmgkb skill Submit compact PharmGKB API requests for genes, variants, clinical annotations, dosing guidelines, and search. Pride skill Submit compact PRIDE Archive API requests for proteomics project discovery and project-level metadata. Proteomexchange skill Submit compact ProteomeXchange PROXI requests for datasets, libraries, peptidoforms, proteins, PSMs, spectra, and USI examples. Pubchem pug skill Submit compact PubChem PUG REST requests for compound properties, descriptions, assay summaries, and substance metadata. Quickgo skill Submit compact QuickGO requests for GO terms, annotations, and ontology traversal. Rcsb pdb skill Submit compact RCSB PDB requests for core metadata, Search API queries, and FASTA downloads. Reactome skill Submit compact Reactome ContentService requests for pathway, event, participant, search, and diagram-related data. Rhea skill Submit compact Rhea reaction search requests for biochemical reactions and reaction IDs. Rnacentral skill Submit compact RNAcentral API requests for RNA entry browsing, single-entry lookup, and cross-reference retrieval. String skill Submit compact STRING API requests for network, interaction partner, and enrichment endpoints. TPMI PheWAS Fetch compact TPMI PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. UKB-TOPMed PheWAS Fetch compact UKB-TOPMed PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Uniprot skill Submit compact UniProt REST API requests for UniProtKB, UniRef, UniParc, and FASTA stream endpoints. 
